PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT04023
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 1194aa    MW: 132257 Da    PI: 9.3462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT04023genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0767102340
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                       W+++E e+++ a +++G++ W+++a  +   Rt  ++
         EMT04023  67 QWSKDELERFYAAYRKYGKD-WRKVAGAVH-DRTSDMV 102
                      6*****************99.******999.9997665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-959111IPR009057Homeodomain-like
PfamPF002495.3E-667106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-567106IPR009057Homeodomain-like
CDDcd001674.02E-468102No hitNo description
SMARTSM011356.4E-58714815IPR033471DIRP domain
PfamPF065841.3E-33714814IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1194 aa     Download sequence    Send to blast
MSSTRKVRNV NKRYAKINED WPEKDATVVH KNKVRITVGY IISITLLTID QRNIYLQKKK  60
LSDLGSQWSK DELERFYAAY RKYGKDWRKV AGAVHDRTSD MVEALYNMNR AYLSLPEGTA  120
TAAGLIAMMT DHYNILDGSN SDHESNGSPK TSRKPQKRGR AKLQSVSKAS DTRYPDLLQS  180
QPASSSYGCL SLLKKKRSGA SVSLAGGEVS SNNGAPFTFL EQRKTGLRSE TCLDLFVGNK  240
PRAVGKRTPR VPVASMYQRD DKIGPSNRQA KPDANNGDDE GALAALALAE VCQRGSPQVS  300
QTSGRSSGQM FLSPGKSIDR KNADSEMGSS KMHGFQVEAD YPEGSLGSRE AETGDYPKDA  360
SYFLNNEGSV SGKSKPKVKR SQKRRKKAAH KTEDQFEDDR EACSGTEEGC SSRKAKDISD  420
LDVFGSKGSW PSNKSNKRSR QLFFGDELSA LDALHTLADI SVNILQPSSI AESESSAQFK  480
DGSKDNESDD KPSVPAAVSL FDKKDKPRKT KKIKRQSEIA GNEVVTRKKA RLSKDHHHDG  540
STSEVKQDDC KCGVKMEKKK RKSSILKISK DEKNTLKDSE KTEASAEEGK VSSNKGRHTH  600
VSPVSKQNKS KAQESSPAHA DLGKEAMDTV DTTENAITQQ SDSASKSKSR RKLGILKALA  660
PESKPAEGAD DSCDNVSYPV NNINLLINAI ICKDKLSHCL SSRFLRRWCM SEWFYSAIDY  720
PWFAKSEFVE YLNHVKLGHV PRLTRVEWGV IRSSLGKPRR LSKQFLQEER EKLSQYRESV  780
RQHYAELQSG VREGLPTDLA RPLAVGQRVI ACHPKTRELH DGSVLTVDRN RCRVQFDRPE  840
LGVEFVMVAV TDPNKVLVDE IVTLQDIDCM PLHPLENFPE SLRRQNIVNK YYSSFSEVKF  900
EDRSKEYGGG GAPRFIPNEA LLVELRHMNE EVSGKQKDGE IIRDLEHFRK QYAMVLVQLR  960
DSNDHVASAL LCLRQRNTFH GQPTQSYPNK STENGGAFNR TPDPSSNLFG YINQESGSQV  1020
MEIIETSRSK AKTMVDVAVQ AMCKVSEGEN AFAKIGEALD NLNLRGTGSG SSILGIRRIP  1080
PDSGQANSDN SASGRFDPAA ATNNISSPRV LPNGSDSEAQ FPSELISSCV ATILMIQNCT  1140
EKQYHPAEVA HILDSALSRL QPCSSQNVPI FREIEMCMGI IKNQMLALIP TPSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374386KPKVKRSQKRRKK
2377383VKRSQKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3658640.0AK365864.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2038G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233693.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X1
RefseqXP_010233694.10.0PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBLM8BB980.0M8BB98_AEGTA; Uncharacterized protein
STRINGBRADI3G01340.30.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-126DNA binding